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Journal Articles Bioinformatics Year : 2004

APE: analyses of phylogenetics and evolution in R language

Abstract

Analysis of Phylogenetics and Evolution (APE) is a package written in the R language for use in molecular evolution and phylogenetics. APE provides both utility functions for reading and writing data and manipulating phylogenetic trees, as well as several advanced methods for phylogenetic and evolutionary analysis (e.g. comparative and population genetic methods). APE takes advantage of the many R functions for statistics and graphics, and also provides a flexible framework for developing and implementing further statistical methods for the analysis of evolutionary processes.
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Dates and versions

ird-01887318 , version 1 (04-10-2018)

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Emmanuel Paradis, Julien Claude, Korbinian Strimmer. APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 2004, 20 (2), pp.289-290. ⟨10.1093/bioinformatics/btg412⟩. ⟨ird-01887318⟩
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